MmuALTA0003720-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000061048 | Cdh3
Description
cadherin 3 [Source:MGI Symbol;Acc:MGI:88356]
Coordinates
chr8:106541307-106543892:+
Coord C1 exon
chr8:106541307-106541492
Coord A exon
chr8:106543651-106543803
Coord C2 exon
chr8:106543804-106543892
Length
153 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
AGATTCGTCTTCTCTCCTAGGGT
3' ss Score
8.73
Exon sequences
Seq C1 exon
TATGAGGCTTGGGTGCCTGAGAACGAAGTGGGCCATGAGGTACAGAGGCTGACAGTGACTGATCTCGATGTCCCCAACTCGCCAGCGTGGCGTGCCACCTACCACATCGTGGGAGGTGATGATGGGGACCATTTCACCATCACCACTCACCCAGAGACCAACCAAGGCGTCCTGACAACCAAGAAG
Seq A exon
GGTTTGGATTTTGAGGCTCAGGACCAACACACCCTGTATGTAGAAGTGACCAACGAGGCTCCCTTTGCAGTGAAGCTCCCGACAGCCACTGCCACCGTGGTGGTCCATGTGAAAGATGTCAACGAAGCCCCTGTGTTTGTTCCACCTTCCAAG
Seq C2 exon
GTCATTGAGGCCCAGGAAGGCATCTCTATTGGGGAACTGGTCTGCATCTATACCGCACAGGACCCAGACAAGGAGGACCAGAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061048-11-15,11-14,11-13-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(61.0=98.4)
A:
NA
C2:
PF0002812=Cadherin=PD(37.0=45.7),PF0002812=Cadherin=PU(31.6=37.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACGAAGTGGGCCATGAG
R:
TTCTGGTCCTCCTTGTCTGGG
Band lengths:
251-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types