GgaALTA1010421-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003534 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr17:6634413-6635824:-
Coord C1 exon
chr17:6635774-6635824
Coord A exon
NA
Coord C2 exon
chr17:6634413-6634552
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
3' ss Seq
GTTTGCTAACATCAAAGCAGCCT
3' ss Score
0.37
Exon sequences
Seq C1 exon
ATGGAGGAGGACGGGCCGCTGCTCCTCAACCTCGGCTCGGCTCCCAGGCGG
Seq A exon
NA
Seq C2 exon
CCTAATGCTCTGAAAAGAAAGCTCCAGTCGTCCCCACATGGAAACCCACCTCTGAAACGTAAACCTAAGCCATCAGTAAACAACTTCAAGAAACGTGTTGCAGAGACTGGCACCAGGGAAAAGGGAAGACCATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534-1-3,1-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.859
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCTCAACCTCGGCTC
R:
ACGTTTCAGAGGTGGGTTTCC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]