GgaALTA1010421-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003534 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr17:6634413-6635824:-
Coord C1 exon
chr17:6635774-6635824
Coord A exon
chr17:6634553-6634555
Coord C2 exon
chr17:6634413-6634552
Length
3 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
3' ss Seq
TTTGTTTGCTAACATCAAAGCAG
3' ss Score
0.08
Exon sequences
Seq C1 exon
ATGGAGGAGGACGGGCCGCTGCTCCTCAACCTCGGCTCGGCTCCCAGGCGG
Seq A exon
CAG
Seq C2 exon
CCTAATGCTCTGAAAAGAAAGCTCCAGTCGTCCCCACATGGAAACCCACCTCTGAAACGTAAACCTAAGCCATCAGTAAACAACTTCAAGAAACGTGTTGCAGAGACTGGCACCAGGGAAAAGGGAAGACCATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.859
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCTCAACCTCGGCTC
R:
ACGTTTCAGAGGTGGGTTTCC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]