MmuALTA0005229-2/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026806 | Ddx31
Description
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Source:MGI Symbol;Acc:MGI:2682639]
Coordinates
chr2:28840406-28845094:+
Coord C1 exon
chr2:28840406-28840860
Coord A exon
chr2:28844838-28844844
Coord C2 exon
chr2:28844845-28845094
Length
7 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCCTTTTGGGAACAACACAGCAA
3' ss Score
-0.77
Exon sequences
Seq C1 exon
GTCTGGAAAGTGCGCTCCGGTAGGGCTGACCCGAGGCGCGCCTGCAGACACGCGGAGAAGGTGGGCGCTTCAGAGAGTCCCTTTCCTAGACACTGGGTGCTAGGTCCGACTAAGAGCCCACGGGAGAGTGAGCCTCCGTGGGTGACTGAAAAGCTGAGAAGACCAGCGTGGTGGCTAAAGGAGACCCTGCTGGGTGGGCGGCGCTCGGCCTCTTCCGGTTTCGGAGGCGTGTGAGGCCTCTTGTCTCCCGCCGGTGCGTGCCGTCCCGGCTCCCGGACCCGGAAGGGGCGGCGGCGGACCGGCGATAGTTGCGAAGATCCTCCCTCTCCACGTGCTACCTGGGCTCCCTGCTGGTTCCGCGGCTCCGCACTTGGGCTTTGGCTACTGTCTGCAGCACTTTGCCTGACCGGCCTTCCAGGACGTGCTTCGGACGCACTCAGGTCCAGATGAAGCGG
Seq A exon
CAAGCAG
Seq C2 exon
AGGCTACCAAGAGAAAGCACCAAGTGTCCAGTGATGCTCCACCAGCAAAACGGAGGAGTGAAATATCCTCTGTTTTGGCCAAGAAAGCCAGTGATAAAGAAACTCAGAGAACATTTAAAGGGAGTACACACAAAACGTTTCCTCCAAAGAAGTATTTGGACAGTATAGGCAATGGAAGGCAAGAGGAGAAGCCATGCATCAAGACTTCATCGCTGTTTAAAAACAACCCTGAGATCCCAGAACTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026806-0-3,0-2,0-1,0-0-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.860
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACTGTCTGCAGCACTTT
R:
TGGTGCTTTCTCTTGGTAGCC
Band lengths:
98-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types