BtaALTA0008898-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000003530 | DDX31
Description
Bos taurus DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 (DDX31), mRNA. [Source:RefSeq mRNA;Acc:NM_001101886]
Coordinates
chr11:102766518-102771662:-
Coord C1 exon
chr11:102771334-102771662
Coord A exon
chr11:102766771-102766774
Coord C2 exon
chr11:102766518-102766770
Length
4 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCCTTTTGGGAACAACGCAGCAA
3' ss Score
-0.18
Exon sequences
Seq C1 exon
ACCCCCGGCACAGGCCGCGCCACGAGGGACTGCCCTGTGGCCGGGGGCGCCGCTGATCCGGCAGCTAGTGGCGCGGGCCCCTTCGTGAGGGGGGCGGGGGACCCCAGAAAGCGCGCGCGGGCACGCAGGACTCGGCGGGACAGCTACAGCGGGGTCCTCGCGCGCGTCCCACGTGGGGTCTCGCGGCGCCTCGCTCCGGGTTTCGCGAGATCCGGAGGCGCCTCTCTGTCGACATGGCAGCCGTCAGCGGAGTGCTTCCTCAGGTCCCCGAGCCCCGGGCCGCGGTCTTCAGGACCTTCTCCAAACCCCGCCCGGCCCACGCGAGGCGG
Seq A exon
CAAG
Seq C2 exon
CAGCGGCCACCAAAAGAAAATGCCAGGCGTCCAGCGAGGCTCCCCCAGCGAAACGGAGGAGCAAAGCCTCTTTTCTCCCGGCCAAGAAAACTGCCGCTAAAGAAACTCGCAGGACCCTGAAGGGGAAGGCACAAAGGACATTTTCTCCCAAGAAGCCCTCAGCCGGCGCGAGGGATGGAGACCAGGAGCGGAAGCCGGGCGCCAAGACTTCATCGCTGTTCAAAAACAACCCTGAGATCCCAGAACTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003530-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGACCTTCTCCAAACCCC
R:
CTTTGCTCCTCCGTTTCGCT
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development