Special

MmuALTA0005229-1/3 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000026806 | Ddx31
Description
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Source:MGI Symbol;Acc:MGI:2682639]
Coordinates
chr2:28695926-28700614:+
Coord C1 exon
chr2:28695926-28696380
Coord A exon
NA
Coord C2 exon
chr2:28700358-28700614
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCCTTTTGGGAACAACACAGCAA
3' ss Score
-0.77
Exon sequences
Seq C1 exon
GTCTGGAAAGTGCGCTCCGGTAGGGCTGACCCGAGGCGCGCCTGCAGACACGCGGAGAAGGTGGGCGCTTCAGAGAGTCCCTTTCCTAGACACTGGGTGCTAGGTCCGACTAAGAGCCCACGGGAGAGTGAGCCTCCGTGGGTGACTGAAAAGCTGAGAAGACCAGCGTGGTGGCTAAAGGAGACCCTGCTGGGTGGGCGGCGCTCGGCCTCTTCCGGTTTCGGAGGCGTGTGAGGCCTCTTGTCTCCCGCCGGTGCGTGCCGTCCCGGCTCCCGGACCCGGAAGGGGCGGCGGCGGACCGGCGATAGTTGCGAAGATCCTCCCTCTCCACGTGCTACCTGGGCTCCCTGCTGGTTCCGCGGCTCCGCACTTGGGCTTTGGCTACTGTCTGCAGCACTTTGCCTGACCGGCCTTCCAGGACGTGCTTCGGACGCACTCAGGTCCAGATGAAGCGG
Seq A exon
NA
Seq C2 exon
CAAGCAGAGGCTACCAAGAGAAAGCACCAAGTGTCCAGTGATGCTCCACCAGCAAAACGGAGGAGTGAAATATCCTCTGTTTTGGCCAAGAAAGCCAGTGATAAAGAAACTCAGAGAACATTTAAAGGGAGTACACACAAAACGTTTCCTCCAAAGAAGTATTTGGACAGTATAGGCAATGGAAGGCAAGAGGAGAAGCCATGCATCAAGACTTCATCGCTGTTTAAAAACAACCCTGAGATCCCAGAACTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026806-0-2,0-1,0-0-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=NA C2=0.826
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000109484





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000109484f2001A, ENSMUSP00000109484f2002A
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr9:135538083-135538084 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr11:102766518-102766774 
HIGH PSI
BtaALTA0008898-2/2
(DDX31)
Chicken
(galGal4)
chr17:6634556-6634557 
ALTERNATIVE
GgaALTA1010421-2/2
(DDX31)
Chicken
(galGal3)
chr17:7274350-7274351 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCACTCAGGTCCAGATGAAGC

				
R: 
ACAGCGATGAAGTCTTGATGCA

				
Band lengths: 
246-414

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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