RnoALTA0011484-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013040 | Ddx31
Description
DEAD-box helicase 31 [Source:RGD Symbol;Acc:1304895]
Coordinates
chr3:7422820-7427611:+
Coord C1 exon
chr3:7422820-7423298
Coord A exon
chr3:7427355-7427439
Coord C2 exon
chr3:7427440-7427611
Length
85 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCCTTTTGGGAACAACACAGCAA
3' ss Score
-0.77
Exon sequences
Seq C1 exon
CTGCTAGGTGGCCGCAGAACTGCCTGTCTGGAAAGTGCGCTCCGGGAGAGCTGACCCGCGGCGCGCCTGCGGACAAGCGGAGAAGGTGGGAGCTTCAGCGAGTCACTTTTCCTAGAGACTGGGTGCTAGGCCCGACTAAGAGCCCACGGGAGAGTGAGTTTCCGTGGGTGACTGAAATACTGCGAAGACCAGCGTGGTGGCTGAGGGAGTTCCCGCTGGGTGGGCGGCGCGCGGCCTCTTCCGGTTTCGGAGGAGTTCGGGGCCTCTTGTCTCCGGCCGGTGCCTGCAGCCTTGGCTCCCGGACCCGGAAGGGGCGGCGGCGGACGGGCAACAGCTGCGAAGAATCTTACTCTCCACGTGCTGCTCGGGCCTCCTGCTCGGTCTGTGGCTCTGAGCTCGGACTTTGGCTACAGCCTGAAGCTCTCTCCGACCGGCCTCCCAGGACGTGCTTCGGACGCACCCACACCAAGATGAGGCGG
Seq A exon
CAAACAGAGGCTACCAAGAGAAAGCACCAAGTGTCCAGCGATGCTCCACCAGCAAAACGGAGGAATGAAATATCCTCTCTTTCAG
Seq C2 exon
CCAAGAAAGCCAGCAATAAAGAAACTCAGAGAGCATTTAAAGGGAGCGCACACAAAACATTTCCTCCAAAGAAGCATTTGGACACTATAGGCAATGAAAGGCAAGAGGAGAAGCCGTGTGTTAAGACTTCGTCGCTGTTTAAAAACAATCCCGAGATCCCAGAACTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013040-0-3,0-2,0-1-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.965
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACTCTCCACGTGCTGCTC
R:
GCGCTCCCTTTAAATGCTCTCT
Band lengths:
183-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]