GgaALTD1007538-2/8 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000003534 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:HGNC:16715]
Coordinates
chr17:6634299-6635878:-
Coord C1 exon
chr17:6635778-6635878
Coord A exon
chr17:6635774-6635777
Coord C2 exon
chr17:6634299-6634552
Length
4 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
3' ss Seq
GTTTGCTAACATCAAAGCAGCCT
3' ss Score
0.37
Exon sequences
Seq C1 exon
GCGCCGCGCTGTGGGGCTGTCCCGGCGCTGCCTGAGCGCGGCCGCCTCGGCGCGATGGAGGAGGACGGGCCGCTGCTCCTCAACCTCGGCTCGGCTCCCAG
Seq A exon
GCGG
Seq C2 exon
CCTAATGCTCTGAAAAGAAAGCTCCAGTCGTCCCCACATGGAAACCCACCTCTGAAACGTAAACCTAAGCCATCAGTAAACAACTTCAAGAAACGTGTTGCAGAGACTGGCACCAGGGAAAAGGGAAGACCATCAAAAAGGTCTCTTCCTAAGAAGCAACTGAATGCCAACCAAAATGAAAGCCAGAAAAGCAAACTTTTCATTAAGACATCCAGCCTGTTTAGAAACAACCCTGATATCCCAGAAATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534-0-3,1-3,2-3,3-3,4-3,5-3,6-3,7-3-2/8
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.859
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGAGGAGGACGGGCC
R:
CAGAGGTGGGTTTCCATGTGG
Band lengths:
102-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]