GgaALTA1010508-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000025712 | DEF8
Description
differentially expressed in FDCP 8 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:25969]
Coordinates
chr11:18295400-18295695:+
Coord C1 exon
chr11:18295400-18295480
Coord A exon
chr11:18295555-18295605
Coord C2 exon
chr11:18295606-18295695
Length
51 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
ACATCTGCCTGCCCGTGCAGCTG
3' ss Score
9.4
Exon sequences
Seq C1 exon
AAGCTGCGCCAGGACATCCTGCTCATGAAGCCATACTTTATCACCTGCAAAGAGGCAATGGAAGCACGGCTGCTGCTGCAG
Seq A exon
CTGCAGGACCGACAGCACTTTGTAGAGAACGACGAGATGTACTCGCTGCAG
Seq C2 exon
GACCTCATTGACATCGAGGCCGGGCGCCTGAGCTGCTCCCTGACTGAGATCCACACCCTCTTTGCCAAGCACATTAAGTTGGACTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025712-9-10,9-9,9-8-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACCTGCAAAGAGGCAATGG
R:
CTCGCAGTCCAACTTAATGTGC
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]