HsaALTA1030851-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000140995 | DEF8
Description
differentially expressed in FDCP 8 homolog [Source:HGNC Symbol;Acc:HGNC:25969]
Coordinates
chr16:89963363-89964310:+
Coord C1 exon
chr16:89963363-89963443
Coord A exon
chr16:89964170-89964220
Coord C2 exon
chr16:89964221-89964310
Length
51 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
CGGCTGCTGGGACTTGGCAGCTC
3' ss Score
2.36
Exon sequences
Seq C1 exon
AAGCTGCGCCAGGACATCCTGCTCATGAAGCCGTACTTCATCACCTGCAGGGAGGCCATGGAGGCTCGTCTGCTGCTGCAG
Seq A exon
CTCCAGGATCGGCAGCATTTTGTGGAGAACGACGAGATGTACTCTGTCCAG
Seq C2 exon
GACCTCCTGGACGTGCATGCCGGCCGCCTGGGCTGCTCGCTCACCGAGATCCACACGCTCTTCGCCAAGCACATCAAGCTGGACTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140995-54-39,54-38-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(12.7=100)
A:
NA
C2:
PF139011=DUF4206=FE(15.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTACTTCATCACCTGCAGGG
R:
AGTCCAGCTTGATGTGCTTGG
Band lengths:
135-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains