MmuALTA0005312-4/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000001482 | Def8
Description
differentially expressed in FDCP 8 [Source:MGI Symbol;Acc:MGI:1346331]
Coordinates
chr8:123458351-123459657:+
Coord C1 exon
chr8:123458351-123458431
Coord A exon
chr8:123459517-123459567
Coord C2 exon
chr8:123459568-123459657
Length
51 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
CACCTGCTGGGTCTTGGCAGCTC
3' ss Score
6.06
Exon sequences
Seq C1 exon
AAACTGCGCCAGGACATCCTGCTCATGAAGCCATACTTCATCACCTGCAAGGAGGCCATGGAGGCGCGACTACTGCTGCAG
Seq A exon
CTCCAAGACAGACAGCATTTTGTGGAGAACGATGAGATGTACTCTATCCAG
Seq C2 exon
GACCTCTTGGAAGTGCACATGGGCCGCCTCAGCTGCTCGCTCACTGAGATCCACACGCTCTTCGCCAAGCACATCAAGTTGGACTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001482-41-40,41-39,41-38,41-37-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(12.7=100)
A:
NA
C2:
PF139011=DUF4206=FE(22.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATACTTCATCACCTGCA
R:
ACTTGATGTGCTTGGCGAAGA
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types