GgaALTA1013656-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003357 | FKBP8
Description
peptidyl-prolyl cis-trans isomerase FKBP8 [Source:RefSeq peptide;Acc:NP_001241668]
Coordinates
chr28:3661495-3661893:+
Coord C1 exon
chr28:3661495-3661583
Coord A exon
chr28:3661763-3661788
Coord C2 exon
chr28:3661789-3661893
Length
26 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATGGCTTTGTGCCACTGCAGGAG
3' ss Score
6.18
Exon sequences
Seq C1 exon
GCTCTGGACCTCTGTGTACAGCTTATGGAGATGGGAGAAACGGCTTTGATTATGTCAGATGCCAAGTACTGCTATGGTGCACAGGGCAG
Seq A exon
GAGCCCTGACATCCCACCCAACGCAG
Seq C2 exon
CGCTCACACTGGAGGTGGAGCTGCTGGAGGCTCGGGATGCACCAGACCTGGAGCTGCTCAGCGGGAGGGAAAAGATAGGCCTGGCCAACCGCAAGCGGGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003357-16-6,16-5,16-4-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025423=FKBP_C=FE(33.0=100)
A:
NA
C2:
PF0025423=FKBP_C=PD(19.3=23.0),PF134141=TPR_11=PU(44.0=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAGTACTGCTATGGTGC
R:
AGGCCTATCTTTTCCCTCCCG
Band lengths:
112-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]