HsaALTA0003370-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000105701 | FKBP8
Description
FK506 binding protein 8, 38kDa [Source:HGNC Symbol;Acc:3724]
Coordinates
chr19:18649026-18650269:-
Coord C1 exon
chr19:18650181-18650269
Coord A exon
NA
Coord C2 exon
chr19:18649026-18649243
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGCTCCCACCCAACTAGCAGGAG
3' ss Score
3.31
Exon sequences
Seq C1 exon
GCCCTGGATCTCAGTGTCCCACTCATGGACGTGGGGGAGACGGCCATGGTCACTGCTGACTCCAAGTACTGCTACGGCCCCCAAGGCAG
Seq A exon
NA
Seq C2 exon
GAGCCCATACATCCCCCCGCACGCGGCCCTGTGCCTGGAGGTGACCCTGAAGACGGCTGTGGACGGGCCTGACCTGGAGATGCTCACGGGGCAGGAGCGCGTGGCCCTGGCCAACCGGAAGCGGGAGTGCGGCAACGCCCACTACCAGCGGGCGGACTTCGTCCTGGCCGCCAACTCCTACGACCTCGCCATCAAGGCTATCACCTCCAGCGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105701-4-4,4-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025423=FKBP_C=FE(32.2=100)
A:
NA
C2:
PF0025423=FKBP_C=PD(19.1=23.0)
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCACTGCTGACTCCAAGT
R:
GTCTTCAGGGTCACCTCCAGG
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)