RnoALTA0015498-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000058359 | Fkbp8
Description
FK506 binding protein 8 [Source:RGD Symbol;Acc:1308670]
Coordinates
chr16:20648972-20649530:-
Coord C1 exon
chr16:20649442-20649530
Coord A exon
chr16:20649096-20649189
Coord C2 exon
chr16:20648972-20649095
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTTGGCCACCTCCCCAGCAGGAG
3' ss Score
4.17
Exon sequences
Seq C1 exon
GCCCTGGACCTCAGCGTCCCGCTCATGCATGTGGGCGAGACAGCAATGGTCACCGCTGACTCCAAGTACTGCTACGGTCCCCAGGGCAG
Seq A exon
GAGCCCATACATCCCCCCCCATGCAGCCCTGTGCCTGGAAGTCACCCTGAAGACAGCAGAGGATGGACCTGACCTGGAGATGCTGAGTGGGCAG
Seq C2 exon
GAGCGCGTGGCCCTGGCCAACCGCAAGCGGGAGTGTGGCAATGCCCACTACCAGCGTGCTGACTTTGTGCTGGCTGCCAACTCCTATGACCTGGCCATCAAGGCCATCACCTCCAACGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058359-18-9,18-8,18-7,18-6-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF0025423=FKBP_C=FE(32.2=100)
A:
NA
C2:
PF0025423=FKBP_C=PD(20.0=24.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGGCGAGACAGCAATG
R:
GTTGGAGGTGATGGCCTTGAT
Band lengths:
178-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]