GgaALTA1014676-1/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006033 | GORASP1
Description
Golgi reassembly-stacking protein 1 [Source:RefSeq peptide;Acc:NP_001026134]
Coordinates
chr2:5257511-5258597:+
Coord C1 exon
chr2:5257511-5257591
Coord A exon
NA
Coord C2 exon
chr2:5258394-5258597
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGTCTTTCTGCACTCTGTAGAAT
3' ss Score
8.23
Exon sequences
Seq C1 exon
GTTCAGGAGAACTCCCCCGCTCAGCAAGGAGGGCTGGAGCCTTTCTTTGACTTCATCATTGCGATAGGACACACCAGGCTG
Seq A exon
NA
Seq C2 exon
AATAAAGAAAACAATATGTTGAAAGATCTACTGAAGGCAAATGCTGAAAAAGCAGTGAAACTGGAGGTGTATAACATCAAAACAATGAAGATAAGAGAGGTGGAGGTGGTCCCCAGTAACATGTGGGGAGGACAAGGTCTTCTCGGAGCCAGCGTGAGGTTCTGCAGTTTCCAGGGAGCCAATGAACACGTGTGGCATGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006033-3-3,3-2,3-1-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCGATAGGACACACCAGG
R:
GGACCACCTCCACCTCTCTTA
Band lengths:
136-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]