HsaALTA0003731-1/4 @ hg38
Alternative 3'ss
Gene
ENSG00000114745 | GORASP1
Description
golgi reassembly stacking protein 1 [Source:HGNC Symbol;Acc:HGNC:16769]
Coordinates
chr3:39102840-39103553:-
Coord C1 exon
chr3:39103473-39103553
Coord A exon
NA
Coord C2 exon
chr3:39102840-39102881
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CAGCCCCATTGCCCCCACAGAAC
3' ss Score
7.79
Exon sequences
Seq C1 exon
GTGCAGGAGAACTCCCCAGCCCAGCAGGCGGGCCTGGAGCCCTACTTTGACTTCATCATCACCATTGGGCACTCGAGGCTG
Seq A exon
NA
Seq C2 exon
AACAAGGAGAATGACACCCTGAAGGCACTACTGAAAGCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114745-11-11,11-10,11-9,11-8-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(27.6=100)
A:
NA
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACTCCCCAGCCCAG
R:
GCTTTCAGTAGTGCCTTCAGGG
Band lengths:
114-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development