HsaALTA0003731-1/4 @ hg19
Alternative 3'ss
Gene
ENSG00000114745 | GORASP1
Description
golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:16769]
Coordinates
chr3:39144331-39145044:-
Coord C1 exon
chr3:39144964-39145044
Coord A exon
NA
Coord C2 exon
chr3:39144331-39144372
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CAGCCCCATTGCCCCCACAGAAC
3' ss Score
7.79
Exon sequences
Seq C1 exon
GTGCAGGAGAACTCCCCAGCCCAGCAGGCGGGCCTGGAGCCCTACTTTGACTTCATCATCACCATTGGGCACTCGAGGCTG
Seq A exon
NA
Seq C2 exon
AACAAGGAGAATGACACCCTGAAGGCACTACTGAAAGCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114745-4-10,4-9,4-8,4-7-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(24.3=100)
A:
NA
C2:
PF044959=GRASP55_65=PU(60.0=97.7),PF0004116=fn3=PU(59.6=79.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACTCCCCAGCCCAG
R:
GCTTTCAGTAGTGCCTTCAGGG
Band lengths:
114-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)