GgaALTA1018552-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31401178-31402939:-
Coord C1 exon
chr7:31402820-31402939
Coord A exon
chr7:31401347-31401419
Coord C2 exon
chr7:31401178-31401346
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTCATTATAATAATCCCTAGGCT
3' ss Score
6.48
Exon sequences
Seq C1 exon
ACATCAATGAGTGTATGGTATTTGGTGCCTGCTCCCAGCACTGCAATAATGTTAAAGGGTCATACAGATGTGCATGTGAGAAAAATTATAAGGAATGGAATAACAGTTGTAAAGCAAAAG
Seq A exon
GCTCTGAAGAACAAGTTCTCTATGTTGCTAATGACACTGACATCCTGGGTTTTGCATATCCATTCAACTACAG
Seq C2 exon
TGATGTTCATCAACAAATATCACATATTGAACATAATTCAAGGATAACTGGAATGGATGCATATTTTCAAGGGAACATGATTGTTTGGAGTACTCAGTTTAATCCTGGAGGAATTTTCTACAAAAAACTTCATGACAAAGAGAAAAGACAAAGTAACAGTGGTTTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-97-122,97-121-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(13.0=7.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTATTTGGTGCCTGCTCC
R:
TGCATCCATTCCAGTTATCCTTGA
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]