MmuALTA0010197-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:40697350-40699631:-
Coord C1 exon
chr2:40699512-40699631
Coord A exon
chr2:40697519-40697591
Coord C2 exon
chr2:40697350-40697518
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTATTACAATGATCTGCAGGCT
3' ss Score
4.89
Exon sequences
Seq C1 exon
ATCTCAATGAATGCCTGCTGTTTGGAATATGCTCTCACCACTGTCTAAACACACGAGGATCATATAAATGTGTCTGTGACCAGAACTTTCAAGAAAAAAACAACAGCTGTATAGCAAAAG
Seq A exon
GCTCTGAAGATCAAGCTCTCTACATAGCTAATGACACTGACATCCTGGGTTTTGTATATCCATTCAACTACAG
Seq C2 exon
TGGCGGTCATCAGCAGATTTCTCATGTTGAACATAATTCAAGAATAACAGGGATGGATGTACATTATCAAAGAAATGTGATTGTCTGGAGTACTCAGTTTAATCCAGGCGGGATTTTCTACAAAATGATCGATGCCAGAGAAAAGAGACAAGCGAATAGTGGCTTGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-110-110,110-109-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=90.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTGTCTAAACACACGAGG
R:
ACTGAGTACTCCAGACAATCACA
Band lengths:
182-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types