HsaALTA1044400-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000168702 | LRP1B
Description
LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:140350819-140353072:-
Coord C1 exon
chr2:140352953-140353072
Coord A exon
chr2:140350966-140351038
Coord C2 exon
chr2:140350819-140350965
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTATTATAATAATCTCCAGGCT
3' ss Score
5.5
Exon sequences
Seq C1 exon
ACCTTAATGAATGTTTGGTGTTTGGCACATGTTCCCATCAATGTATAAATGTGGAAGGATCATATAAATGTGTGTGTGACCAGAATTTTCAAGAAAGAAATAACACCTGCATAGCAGAAG
Seq A exon
GCTCTGAAGATCAAGTTCTCTACATTGCTAATGACACTGATATCCTGGGTTTTATATATCCATTCAACTACAG
Seq C2 exon
TGGCGATCATCAACAAATTTCTCATATTGAACATAATTCAAGAATAACAGGGATGGATGTATATTATCAAAGAGATATGATTATTTGGAGTACTCAGTTTAATCCAGGCGGAATTTTCTACAAAAGGATCCATGGCAGAGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-111-147,111-146-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=90.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTGTGACCAGAATTTTCA
R:
CCTTTTGTAGAAAATTCCGCCTGG
Band lengths:
179-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains