GgaALTA1020941-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8356389-8356693:+
Coord C1 exon
chr10:8356389-8356453
Coord A exon
NA
Coord C2 exon
chr10:8356657-8356693
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
CACTTCCTGTCTACTTCTAGAAC
3' ss Score
9.24
Exon sequences
Seq C1 exon
TCTATTGCTAAAGAGATATCTAATCGGCTGCATCATGAGCCAGAAGGGGACAGAACACTAAGACG
Seq A exon
NA
Seq C2 exon
AACAAATGAAGTTCAGAACGAAGCAGACATGAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641-37-35,37-34-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAAAGAGATATCTAATCGGCTGC
R:
TCTTTCATGTCTGCTTCGTTCTGA
Band lengths:
96-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]