MmuALTA0011572-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75288893-75289227:+
Coord C1 exon
chr9:75288893-75288956
Coord A exon
NA
Coord C2 exon
chr9:75289059-75289227
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GCGCCTCATCCCTTCCTCAGGGC
3' ss Score
9.55
Exon sequences
Seq C1 exon
GAAAGCTGGAAGAGCCGTTCAGCCACCTGAACCGAATCCGAGAAGAGGAGAGAATGCAGGGCAG
Seq A exon
NA
Seq C2 exon
GGCCGTGGAAGCACAGAGTGAGATGCATCCAGAAGGGAAGGAGAGGCTGGTGGGTGCGATCCACGAACCGCATGAAGCCATCAAGTTCCCAAAGAAGCAACCAGAAGCTGAGGAGGAAGTCGAGAGTATTCTCCAACAAGAAGCGTCCCGGCTCTCTTTGGAAAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590-57-48,57-47-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.906
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGAGAGAATGCAGGGCA
R:
ACTTGATGGCTTCATGCGGTT
Band lengths:
108-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types