MmuALTA0011572-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75288893-75289227:+
Coord C1 exon
chr9:75288893-75288956
Coord A exon
chr9:75289038-75289058
Coord C2 exon
chr9:75289059-75289227
Length
21 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GTGCTCACACCCATTCCCAGAGC
3' ss Score
5.23
Exon sequences
Seq C1 exon
GAAAGCTGGAAGAGCCGTTCAGCCACCTGAACCGAATCCGAGAAGAGGAGAGAATGCAGGGCAG
Seq A exon
AGCGCCTCATCCCTTCCTCAG
Seq C2 exon
GGCCGTGGAAGCACAGAGTGAGATGCATCCAGAAGGGAAGGAGAGGCTGGTGGGTGCGATCCACGAACCGCATGAAGCCATCAAGTTCCCAAAGAAGCAACCAGAAGCTGAGGAGGAAGTCGAGAGTATTCTCCAACAAGAAGCGTCCCGGCTCTCTTTGGAAAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590-57-48,57-47-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.906
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGAGAGAATGCAGGGCA
R:
ACTTGATGGCTTCATGCGGTT
Band lengths:
108-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types