RnoALTA0025422-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82231797-82232131:+
Coord C1 exon
chr8:82231797-82231860
Coord A exon
chr8:82231942-82231962
Coord C2 exon
chr8:82231963-82232131
Length
21 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GTGCTCACACCGAGGCCCAGAGC
3' ss Score
-6.93
Exon sequences
Seq C1 exon
GAAAGCAGGAAGAACCATTCAGCCACCTGAACCGAGGCCTAGAAGAGGAGGGAAGGCAGGGCAA
Seq A exon
AGCCCCTCGTCCCTTCCTCAG
Seq C2 exon
GGCCGTGGAAGCACAGAGCGAGACGCATCCGGAAGGGAAGGAGAGGCTGGTGGGTAAGATCCAAGAACCACAGGAGGCCATCAAGTTCCCAAAGAAGCAAGCAGAAGCTGAGGAGGAAGTCGAGAGTATTCTCCGACAAGAGGCGTCTCGGCTGTCTTTGGAAAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356-43-45,43-44-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.877
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(11.2=100)
A:
NA
C2:
PF131661=AAA_13=FE(29.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAACCGAGGCCTAGAAGA
R:
TTGGATCTTACCCACCAGCCT
Band lengths:
103-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]