RnoALTA0025422-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82231797-82232131:+
Coord C1 exon
chr8:82231797-82231860
Coord A exon
NA
Coord C2 exon
chr8:82231963-82232131
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GCCCCTCGTCCCTTCCTCAGGGC
3' ss Score
10.53
Exon sequences
Seq C1 exon
GAAAGCAGGAAGAACCATTCAGCCACCTGAACCGAGGCCTAGAAGAGGAGGGAAGGCAGGGCAA
Seq A exon
NA
Seq C2 exon
GGCCGTGGAAGCACAGAGCGAGACGCATCCGGAAGGGAAGGAGAGGCTGGTGGGTAAGATCCAAGAACCACAGGAGGCCATCAAGTTCCCAAAGAAGCAAGCAGAAGCTGAGGAGGAAGTCGAGAGTATTCTCCGACAAGAGGCGTCTCGGCTGTCTTTGGAAAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356-43-45,43-44-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.877
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(11.2=100)
A:
NA
C2:
PF131661=AAA_13=FE(29.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAACCGAGGCCTAGAAGA
R:
TTGGATCTTACCCACCAGCCT
Band lengths:
103-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]