GgaALTA1022485-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003830 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr17:6108719-6109382:+
Coord C1 exon
chr17:6108719-6108802
Coord A exon
chr17:6109137-6109170
Coord C2 exon
chr17:6109171-6109382
Length
34 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GTCTTTTGTTTCTGTTGTAGCAA
3' ss Score
9.74
Exon sequences
Seq C1 exon
CTAAGTTGTCCCCTGTGAAGCTGACACAGTTGAGGAATTTTCTAGCCAAGAGGAAGACTCCACCAGTTAGGTCTATGGCTCCAG
Seq A exon
CAAGTTTGTCCCGATCTGCCTTCTTGTCCACAAG
Seq C2 exon
ATACTATGAAGACTTGGATGAAGTCAGTTCAACATCCTCAGTTTCTCAGTCTCTGGAGAATGAGGATCTGCAGGCAGCGGACCAGGAAGAGGAGGCTGCTCCCATCCAAGTCCCTCGTCATGCCCCTGTGGTCCGCACTCCGTCTATCCAGCCTGGTTTGGTGGCTCAGCCTCCATCCTTTGGGAAACAACACCCCTCCTTGGGCACTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003830-27-33,27-32,27-31-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.724 A=NA C2=0.675
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGACTCCACCAGTTAGGT
R:
GCTGCCTGCAGATCCTCATTC
Band lengths:
113-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]