MmuALTA1000866-4/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:32011185-32017337:+
Coord C1 exon
chr2:32011185-32011268
Coord A exon
chr2:32017026-32017103
Coord C2 exon
chr2:32017104-32017337
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TTGGGGTGGGCCTTCTGCAGCCA
3' ss Score
3.25
Exon sequences
Seq C1 exon
GTAAATTGTCCCCGGCGAAACAGGCCCAACTGAGGAACTTCTTGGCCAAAAGGAAGACCCCACCAGTGAGGTCTACTGCTCCAG
Seq A exon
CCAGCCTGTCCCGGTCAGCCTTCCTATCTCAGAGGTACTATGAAGACTTAGATGAAGGCAGCTCCGCGTCATCCGTAG
Seq C2 exon
CTCAGCCTCTGGAGGGAGAAGATGCCCGGCCAACCTGCACATCTGTAGCTCAGCCTCTGGAGGGAGAAGATGCCCAGCCAATCTGCAAAGAGGAAGAGGCTGTGGTCCCAGTACCTCGGCATGCCCCTGTGGTCCGCACACCTTCTATCCAACCCAGTCTCCTGCCTCAGTCGATGCCCTTTGCAAAGCCTCACCTGATCCATAGTTCTTCACCTGCCGTGATGAGCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855-45-50,45-49,45-48,45-47-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.810
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGAGGTCTACTGCTCCA
R:
GGTTGGATAGAAGGTGTGCGG
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types