RnoALTA0027315-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11021294-11025822:+
Coord C1 exon
chr3:11021294-11021377
Coord A exon
chr3:11025553-11025570
Coord C2 exon
chr3:11025571-11025822
Length
18 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTTTGGGCGGGCGTTTGTAGCCA
3' ss Score
2.26
Exon sequences
Seq C1 exon
GTAAACTGTCCCCTGCGAAACAGGCCCAACTGAGGAACTTCTTGGCCAAAAGGAAGACCCCACCAGTGAGGTCTACTGCTCCAG
Seq A exon
CCAGCCTGTCTCGGTCAG
Seq C2 exon
CCTTCCTGTCTCAGAGGTACTATGAAGACTTAGATGAAGGCAGCTCCGCGTCGTCCGTAGCTCACCCTCTGGAGGGAGAAGATGCCCGGCCGACGCCGACCTGCAGAGAGGAGGAGGCTGTGGTCCCAGTCCCTCGGCATGCCCCCGTGGTCCGCACACCTTCTGTCCAACCCAGTCTCCTGCCTCAGGCGATGCCTTTTGCAAAGCCTCACCTGATTCATAGTTCTTCACCTGCTGCGATGAGCTCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393-18-22,18-21,18-20-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.835
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGAGGTCTACTGCTCCA
R:
GGGCATCTTCTCCCTCCAGAG
Band lengths:
109-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]