GgaALTA1026727-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000028167 | RBM18
Description
RNA binding motif protein 18 [Source:HGNC Symbol;Acc:HGNC:28413]
Coordinates
chr17:8738420-8740415:-
Coord C1 exon
chr17:8740329-8740415
Coord A exon
NA
Coord C2 exon
chr17:8738420-8738505
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TACTAGTCTTCCATTTGCAGAGA
3' ss Score
7.13
Exon sequences
Seq C1 exon
GAAGCAGAAAAGGCGATCCAGTGTCTCAATGGGAAGCTGGCCCTTTCCAAGAAATTGGTGGTGCGGTGGGCACACGCACAAGTCAAG
Seq A exon
NA
Seq C2 exon
AGATACGATCACAATAAGAACGAGAAGATCCTTCCGATCAGTCTGGAGCCATCGTCCAGCACAGAGCCACCCCAGTCCAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028167-12-10,12-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.448
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(25.7=65.5)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGGCCCTTTCCAAGAA
R:
ATGGCTCCAGACTGATCGGAA
Band lengths:
107-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]