DreALTA0022479-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000044255 | rbm18
Description
RNA binding motif protein 18 [Source:ZFIN;Acc:ZDB-GENE-040426-1764]
Coordinates
chr10:9528300-9536183:+
Coord C1 exon
chr10:9528300-9528380
Coord A exon
NA
Coord C2 exon
chr10:9536095-9536183
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
GTGTGTTTGTTGTCATTCAGAGA
3' ss Score
7.54
Exon sequences
Seq C1 exon
GAGGCTGAGCGGGCTATTCAGTGTCTGAACGGGAAGTTGGCACTTTCTAAGAAGTTAGTGGTACGGTGGGCTCATGCACAG
Seq A exon
NA
Seq C2 exon
AGATTTGAACCCTTCCGAGGAGAAAAAAATATGCCAGCCAGTTTAGAGCCTTCATCCAGTGAAGCTGAGGATCTGCCAACCTCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044255-7-6,7-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(25.7=70.4)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCGGGCTATTCAGTGTC
R:
TCAGTGAGGTTGGCAGATCCT
Band lengths:
165-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]