HsaALTA1019947-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000119446 | RBM18
Description
RNA binding motif protein 18 [Source:HGNC Symbol;Acc:HGNC:28413]
Coordinates
chr9:122245256-122247604:-
Coord C1 exon
chr9:122247518-122247604
Coord A exon
chr9:122245340-122245341
Coord C2 exon
chr9:122245256-122245339
Length
2 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
TCTCTATTTCTCATTTTCAGAGA
3' ss Score
10.98
Exon sequences
Seq C1 exon
GAAGCAGAGCAAGCCATCCAGTGTCTCAATGGCAAGTTGGCCCTGTCCAAGAAGCTGGTGGTGCGATGGGCACATGCTCAAGTAAAG
Seq A exon
AG
Seq C2 exon
ATATGATCATAACAAGAATGATAAGATTCTTCCAATCAGTCTCGAGCCATCCTCAAGCACTGAGCCTACTCAGTCTAACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119446-11-16,11-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.431
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(25.7=65.5)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCAAGAAGCTGGTGGTG
R:
TTGAGGATGGCTCGAGACTGA
Band lengths:
101-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains