DreEX0061223 @ danRer10
Exon Skipping
Gene
ENSDARG00000044255 | rbm18
Description
RNA binding motif protein 18 [Source:ZFIN;Acc:ZDB-GENE-040426-1764]
Coordinates
chr10:9527448-9536183:+
Coord C1 exon
chr10:9527448-9527574
Coord A exon
chr10:9528300-9528380
Coord C2 exon
chr10:9536095-9536183
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTGATTTCTGTCCATCGCAGGAG
3' ss Score
9.27
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTATCACCTAGTGAAGCTTCTGGAGAAGTTCGGGAAAGTAAAGCAGTTTGACTTTCTGTTTCACAAGTCGGGTCCTCTGGAGGGCCAGCCAAGAGGATACTGCTTCGTCAACTTCCACACCAAAGAG
Seq A exon
GAGGCTGAGCGGGCTATTCAGTGTCTGAACGGGAAGTTGGCACTTTCTAAGAAGTTAGTGGTACGGTGGGCTCATGCACAG
Seq C2 exon
AGATTTGAACCCTTCCGAGGAGAAAAAAATATGCCAGCCAGTTTAGAGCCTTCATCCAGTGAAGCTGAGGATCTGCCAACCTCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044255_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
PF0007617=RRM_1=PD(25.7=70.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTAGTGAAGCTTCTGGAGA
R:
GAAGGCTCTAAACTGGCTGGC
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]