GgaEX1048535 @ galGal4
Exon Skipping
Gene
ENSGALG00000028167 | RBM18
Description
RNA binding motif protein 18 [Source:HGNC Symbol;Acc:HGNC:28413]
Coordinates
chr17:8738420-8741259:-
Coord C1 exon
chr17:8741133-8741259
Coord A exon
chr17:8740329-8740415
Coord C2 exon
chr17:8738420-8738505
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTGCATCCTGTGCAGGAA
3' ss Score
9.19
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTACCACCTTCTCAAACTCCTTCAGAAGTTCGGCAAAGTAAAGCAATTTGATTTTCTCTTTCACAAGTCTGGAGCTTTGGAGGGGCAGCCAAGGGGTTACTGTTTTGTGAACTTTGAAACCAAACAG
Seq A exon
GAAGCAGAAAAGGCGATCCAGTGTCTCAATGGGAAGCTGGCCCTTTCCAAGAAATTGGTGGTGCGGTGGGCACACGCACAAGTCAAG
Seq C2 exon
AGATACGATCACAATAAGAACGAGAAGATCCTTCCGATCAGTCTGGAGCCATCGTCCAGCACAGAGCCACCCCAGTCCAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028167-'11-10,'11-6,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.448
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
PF0007617=RRM_1=PD(25.7=65.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTTCAGAAGTTCGGCAA
R:
GGACGATGGCTCCAGACTGAT
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]