RnoEX0074563 @ rn6
Exon Skipping
Gene
ENSRNOG00000006763 | Rbm18
Description
RNA binding motif protein 18 [Source:RGD Symbol;Acc:1307411]
Coordinates
chr3:15448870-15453678:-
Coord C1 exon
chr3:15453552-15453678
Coord A exon
chr3:15450636-15450722
Coord C2 exon
chr3:15448870-15448955
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCTTGTCCTGTCTTGGACAGGAA
3' ss Score
9.33
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATACCACCTCCTCAAGCTCCTCCAGAGGTTCGGCAAGGTGAAGCAATTCGATTTCCTCTTCCACAAGTCGGGTGCTTTGGAGGGCCAGCCCCGAGGGTACTGTTTTGTTAACTTTGAGACTAAGCAG
Seq A exon
GAAGCAGAACAAGCCATCCAGTGTCTCAATGGCAAGCTGGCGCTGTCTAAGAAGCTGGTTGTGCGATGGGCCCACGCTCAGGTCAAG
Seq C2 exon
AGATACGATCATAACAAGAATGATAAGATCCTTCCCATCAGCCTTGAGCCATCCTCAAGCACTGAAGCTACTCAGTCTAACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006763-'6-9,'6-6,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.207
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
PF0007617=RRM_1=PD(25.7=65.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCAAGCTCCTCCAGAG
R:
CTTGAGGATGGCTCAAGGCTG
Band lengths:
180-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]