BtaEX6045990 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016367 | RBM18
Description
Bos taurus RNA binding motif protein 18 (RBM18), mRNA. [Source:RefSeq mRNA;Acc:NM_001034324]
Coordinates
chr11:93105692-93110798:-
Coord C1 exon
chr11:93110672-93110798
Coord A exon
chr11:93107615-93107701
Coord C2 exon
chr11:93105692-93105777
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTAATCCCTTTCCTGAACAGGAA
3' ss Score
10.78
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATACCATCTCCTCAGGCTGCTGCAGAAGTTTGGCACGGTGAAGCAGTTCGACTTCCTCTTCCACAAGTCAGGTGCTCTGGAGGGACAGCCTCGAGGGTACTGTTTCGTCAACTTTGAAACTAAGCAG
Seq A exon
GAAGCAGAACAAGCCATCCAGTGTCTGAACGGCAAGCTGGCCCTGTCTAAGAAGCTGGTGGTGCGCTGGGCACACGCTCAAGTGAAG
Seq C2 exon
AGATACGATCATAACAAGAATGATAAGATCCTTCCAATTAGTCTTGAGCCGTCCTCAAGCACTGAGCCTGCGCAGTCTAACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016367-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.276
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
PF0007617=RRM_1=PD(25.7=65.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTGAAGCAGTTCGACTTC
R:
CTTAGGTTAGACTGCGCAGGC
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]