MmuEX6100885 @ mm9
Exon Skipping
Gene
ENSMUSG00000026889 | Rbm18
Description
RNA binding motif protein 18 [Source:MGI Symbol;Acc:MGI:1915139]
Coordinates
chr2:35976333-35982771:-
Coord C1 exon
chr2:35982645-35982771
Coord A exon
chr2:35978372-35978458
Coord C2 exon
chr2:35976333-35976418
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCTTGTCCTGTCTTGGGCAGGAA
3' ss Score
9.17
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATACCACCTCCTCAAGCTCCTCCAGAAGTTTGGCAAGGTGAAGCAGTTTGACTTCCTCTTCCATAAGTCAGGTGCTTTGGAGGGCCAGCCCCGAGGGTACTGTTTTGTTAACTTTGAAACTAAGCAG
Seq A exon
GAAGCAGAACAAGCCATCCAGTGTCTCAATGGCAAGCTGGCGCTGTCTAAGAAGCTGGTTGTACGATGGGCCCACGCTCAAGTCAAG
Seq C2 exon
AGATATGATCATAACAAGAATGATAAGATCCTTCCCATCAGCCTTGAGCCATCCTCAAGCACTGAGCCTGCTCAGTCTAACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026889-'8-6,'8-5,11-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.099 C2=0.119
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
PF0007617=RRM_1=PD(25.7=65.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCAAGCTCCTCCAGAA
R:
CTTGAGGATGGCTCAAGGCTG
Band lengths:
180-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: