HsaEX0052635 @ hg19
Exon Skipping
Gene
ENSG00000119446 | RBM18
Description
RNA binding motif protein 18 [Source:HGNC Symbol;Acc:28413]
Coordinates
chr9:125007535-125014252:-
Coord C1 exon
chr9:125014126-125014252
Coord A exon
chr9:125009797-125009883
Coord C2 exon
chr9:125007535-125007620
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTGTCCCTTTCCTGGACAGGAA
3' ss Score
10.84
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
ATACCACCTCCTCAAGCTCCTCCAGAAGTTTGGCAAGGTAAAGCAGTTTGACTTCCTCTTCCACAAGTCAGGTGCTTTGGAGGGACAGCCTCGAGGCTACTGTTTTGTTAACTTTGAAACTAAGCAG
Seq A exon
GAAGCAGAGCAAGCCATCCAGTGTCTCAATGGCAAGTTGGCCCTGTCCAAGAAGCTGGTGGTGCGATGGGCACATGCTCAAGTAAAG
Seq C2 exon
AGATATGATCATAACAAGAATGATAAGATTCTTCCAATCAGTCTCGAGCCATCCTCAAGCACTGAGCCTACTCAGTCTAACCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119446-'4-6,'4-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.000 C2=0.471
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
PF0007617=RRM_1=PD(25.7=65.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCAAGCTCCTCCAGAA
R:
TTGAGGATGGCTCGAGACTGA
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)