MmuEX6100885 @ mm10
Exon Skipping
Gene
ENSMUSG00000026889 | Rbm18
Description
RNA binding motif protein 18 [Source:MGI Symbol;Acc:MGI:1915139]
Coordinates
chr2:36120813-36127251:-
Coord C1 exon
chr2:36127125-36127251
Coord A exon
chr2:36122852-36122938
Coord C2 exon
chr2:36120813-36120898
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCTTGTCCTGTCTTGGGCAGGAA
3' ss Score
9.17
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATACCACCTCCTCAAGCTCCTCCAGAAGTTTGGCAAGGTGAAGCAGTTTGACTTCCTCTTCCATAAGTCAGGTGCTTTGGAGGGCCAGCCCCGAGGGTACTGTTTTGTTAACTTTGAAACTAAGCAG
Seq A exon
GAAGCAGAACAAGCCATCCAGTGTCTCAATGGCAAGCTGGCGCTGTCTAAGAAGCTGGTTGTACGATGGGCCCACGCTCAAGTCAAG
Seq C2 exon
AGATATGATCATAACAAGAATGATAAGATCCTTCCCATCAGCCTTGAGCCATCCTCAAGCACTGAGCCTGCTCAGTCTAACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026889-'14-13,'14-8,17-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.075 C2=0.159
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
PF0007617=RRM_1=PD(25.7=65.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCAAGCTCCTCCAGAA
R:
CTTGAGGATGGCTCAAGGCTG
Band lengths:
180-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types