GgaALTA1026809-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011132 | RBMS1
Description
RNA-binding motif, single-stranded-interacting protein 1 [Source:RefSeq peptide;Acc:NP_990355]
Coordinates
chr7:21231198-21243560:+
Coord C1 exon
chr7:21231198-21231289
Coord A exon
NA
Coord C2 exon
chr7:21243403-21243560
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGTTTTTTATTTTATTTCAGCAA
3' ss Score
8.71
Exon sequences
Seq C1 exon
GTTATGGTTTTGTGGACTTCGACAGCCCAGCAGCTGCTCAGAAGGCAGTTTCTGCTCTAAAGGCTAGTGGAGTCCAGGCACAAATGGCAAAG
Seq A exon
NA
Seq C2 exon
CAACAAGAACAGGATCCAACAAATTTATACATTTCCAATTTGCCACTTTCAATGGATGAGCAGGAGCTTGAGAACATGCTTAAGCCTTTTGGGCAGGTTATCTCTACGAGGATATTGCGTGACTCGAGTGGAACAAGCCGTGGTGTTGGCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132-18-14,18-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(38.8=83.9)
A:
NA
C2:
PF0007617=RRM_1=PU(66.7=83.0),PF072716=Cytadhesin_P30=PU(0.6=1.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGTCCAGGCACAAATG
R:
AGCATGTTCTCAAGCTCCTGC
Band lengths:
107-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]