RnoALTA0033352-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000008482 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:RGD Symbol;Acc:1307777]
Coordinates
chr3:46831857-46842421:-
Coord C1 exon
chr3:46842330-46842421
Coord A exon
chr3:46832009-46832014
Coord C2 exon
chr3:46831857-46832008
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTCTTTCTGTTCTGCCTTAGCAA
3' ss Score
7.61
Exon sequences
Seq C1 exon
GTTATGGATTTGTTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTCTCCGCCCTGAAGGCGAGTGGAGTCCAGGCTCAGATGGCAAAG
Seq A exon
CAACAG
Seq C2 exon
GAACAAGATCCTACCAACCTGTACATTTCTAACCTGCCACTGTCCATGGATGAACAAGAACTTGAAAATATGCTCAAACCCTTTGGACAAGTTATTTCTACAAGGGTCCTGCGTGATTCCAGTGGTACCAGCCGTGGTGTTGGCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008482-13-10,13-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.453
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(38.8=83.9)
A:
NA
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCTGTCTCCGCCCTGAA
R:
TCCATGGACAGTGGCAGGTTA
Band lengths:
102-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]