MmuALTA0014997-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026970 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]
Coordinates
chr2:60781861-60792780:-
Coord C1 exon
chr2:60792689-60792780
Coord A exon
chr2:60782013-60782018
Coord C2 exon
chr2:60781861-60782012
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTCTTTCTGCTCTGCCTTAGCAA
3' ss Score
6.63
Exon sequences
Seq C1 exon
GTTATGGTTTTGTTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTCTCCGCCCTGAAGGCGAATGGAGTCCAGGCTCAGATGGCAAAG
Seq A exon
CAACAG
Seq C2 exon
GAACAAGATCCTACCAACCTGTACATTTCTAACCTGCCGCTGTCCATGGATGAGCAGGAACTTGAAAATATGCTCAAACCCTTTGGACAAGTTATTTCTACAAGGGTCCTACGTGATTCCAGTGGTGCCAGCCGTGGTGTTGGCTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026970-31-21,31-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=NA C2=0.340
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(37.9=80.6)
A:
NA
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGCGAATGGAGTCCAG
R:
GTTCCTGCTCATCCATGGACA
Band lengths:
97-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types