GgaALTA1032861-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000016144 | TMPRSS2
Description
transmembrane protease, serine 2 [Source:HGNC Symbol;Acc:HGNC:11876]
Coordinates
chr1:108299836-108301081:-
Coord C1 exon
chr1:108300986-108301081
Coord A exon
chr1:108299934-108299978
Coord C2 exon
chr1:108299836-108299933
Length
45 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CATGCATGCTTCAATTTTAGGTA
3' ss Score
10.43
Exon sequences
Seq C1 exon
ATACAATACGACCAGTTTGTCTGCCTAACCCGGGAATGATGTTCCAGCCTAATCAGCAGTGCTGGATATCTGGGTGGGGAGCAGAGTACCAAGGAG
Seq A exon
GTAAAACAGCAAATGACTTGAATTATGTCATGGTACCCTTAATAG
Seq C2 exon
AACGTTCTACATGTAATTCTGTCTATGTCTACGATGGCATGGTCTTGCCTACAATGGTCTGTGCTGGATATTTACAAGGAGGAATTGATTCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016144-18-16,18-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCTAACCCGGGAATGAT
R:
CCAGCACAGACCATTGTAGGC
Band lengths:
144-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]