MmuALTA0018519-3/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000000385 | Tmprss2
Description
transmembrane protease, serine 2 [Source:MGI Symbol;Acc:MGI:1354381]
Coordinates
chr16:97567596-97568503:-
Coord C1 exon
chr16:97568408-97568503
Coord A exon
chr16:97567617-97567738
Coord C2 exon
chr16:97567596-97567616
Length
122 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCTGATGCCTCTGTTGTTAGGGA
3' ss Score
4.72
Exon sequences
Seq C1 exon
ATCTAGTGAAGCCAGTGTGTCTGCCGAACCCAGGCATGATGCTAGACCTAGACCAGGAATGCTGGATTTCGGGGTGGGGGGCCACCTATGAGAAAG
Seq A exon
GGAAGACCTCGGACGTGTTGAATGCTGCCATGGTACCCTTGATCGAGCCCTCCAAATGTAATAGTAAATACATATACAACAACCTAATCACACCAGCCATGATCTGTGCCGGCTTCCTCCAG
Seq C2 exon
GGGTCTGTCGACTCTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000385-32-23,32-22,32-21,32-20,32-19-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types