HsaALTA1050624-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000184012 | TMPRSS2
Description
transmembrane protease, serine 2 [Source:HGNC Symbol;Acc:HGNC:11876]
Coordinates
chr21:41468396-41470743:-
Coord C1 exon
chr21:41470648-41470743
Coord A exon
chr21:41468527-41468538
Coord C2 exon
chr21:41468396-41468526
Length
12 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ACAAGTCTCCCTGTCCTTAGGGA
3' ss Score
8.74
Exon sequences
Seq C1 exon
ACCTAGTGAAACCAGTGTGTCTGCCCAACCCAGGCATGATGCTGCAGCCAGAACAGCTCTGCTGGATTTCCGGGTGGGGGGCCACCGAGGAGAAAG
Seq A exon
GGAAGACCTCAG
Seq C2 exon
AAGTGCTGAACGCTGCCAAGGTGCTTCTCATTGAGACACAGAGATGCAACAGCAGATATGTCTATGACAACCTGATCACACCAGCCATGATCTGTGCCGGCTTCCTGCAGGGGAACGTCGATTCTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184012-38-33,38-32,38-31-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGCTGCAGCCAGAACAG
R:
AATGAGAAGCACCTTGGCAGC
Band lengths:
93-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains