GgaALTA1034484-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004971 | URM1
Description
Ubiquitin-related modifier 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZJU4]
Coordinates
chr17:4964684-4967354:-
Coord C1 exon
chr17:4967284-4967354
Coord A exon
chr17:4964716-4964726
Coord C2 exon
chr17:4964684-4964715
Length
11 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
ATTTGTTCTTTTTATTTCAGGGG
3' ss Score
10.09
Exon sequences
Seq C1 exon
GCGCCTTCCCTTCCCTTCCCTCTCGCCGCCGCCAAGATGGCGGCGCCCGTGTCGCTGCAGGTGGAGTTCGG
Seq A exon
GGGTGGTGCAG
Seq C2 exon
AACTCTTGTTCGATGGTGTAAAAAAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004971-3-3,3-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0363810=TCR=PU(10.8=33.3)
A:
NA
C2:
PF091386=Urm1=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCTTCCCTTCCCTCTC
R:
TTTTTACACCATCGAACAAGAGTT
Band lengths:
92-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]