RnoALTA0043680-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000026636 | Urm1
Description
ubiquitin related modifier 1 [Source:RGD Symbol;Acc:1306599]
Coordinates
chr3:8389024-8393761:+
Coord C1 exon
chr3:8389024-8389078
Coord A exon
chr3:8393691-8393692
Coord C2 exon
chr3:8393693-8393761
Length
2 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCTCTGGCTTTCCTTTGTAGAGG
3' ss Score
9.39
Exon sequences
Seq C1 exon
GCTAGTTTGGCTTCCTCAACATGGCGGCGCCCTTATGTGTGGAGGTGGAGTTCGG
Seq A exon
AG
Seq C2 exon
GTGGTGCGGAGCTCCTGTTTGATGGGGTAAAAAAGCATCAAGTCACCTTGCCTGGGCAGGAGGAACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026636-1-1,1-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=PU(6.2=50.0)
A:
NA
C2:
PF091386=Urm1=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTATGTGTGGAGGTGGA
R:
AGGGTTCCTCCTGCCCAG
Band lengths:
96-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]