MmuALTA1041256-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000069020 | Urm1
Description
ubiquitin related modifier 1 [Source:MGI Symbol;Acc:MGI:1915455]
Coordinates
chr2:29827342-29832762:+
Coord C1 exon
chr2:29827342-29827435
Coord A exon
chr2:29832692-29832693
Coord C2 exon
chr2:29832694-29832762
Length
2 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCTTTGGCCTTCCTTTTTAGAGG
3' ss Score
9.55
Exon sequences
Seq C1 exon
GAAATAAACGGGCGCTCCGGAAGTTAAAGGGCGTGTCCTGCTAGTTTGGTTTCCTAAACATGGCGGCGCCCTTATGTGTGAAGGTGGAGTTCGG
Seq A exon
AG
Seq C2 exon
GTGGTGCAGAGCTCCTGTTTGATGGGGTAAAAAAGCATCAAGTCGCCTTGCCTGGGCAGGAGGAACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069020-4-5,4-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF091386=Urm1=PU(6.2=50.0)
A:
NA
C2:
PF091386=Urm1=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGTCCTGCTAGTTTGGTT
R:
ACCCCATCAAACAGGAGCTCT
Band lengths:
92-94
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types