GgaALTA1035423-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000012574 | WDSUB1
Description
WD repeat, SAM and U-box domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001026434]
Coordinates
chr7:36036396-36037392:-
Coord C1 exon
chr7:36037286-36037392
Coord A exon
chr7:36036567-36036578
Coord C2 exon
chr7:36036396-36036566
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TTTATCTTTCCTTTCCCAAGGAA
3' ss Score
9.23
Exon sequences
Seq C1 exon
ATATGTCACAACTTGTGCCTTTGCTCCATGTAGTCTCTTCCTTGCCACGGGTTCAATGGATAAAACTGTGCACATATGGAAACTGGACAATAAGCAACCCTGTGCAG
Seq A exon
GAAACACTATAG
Seq C2 exon
AAAATGACTCTAAGATTAGAACTGCTGAGAACTGGTCAGAGGATGATGTTTCAGCCTGGCTTTGTGCACAAGGCTTCGCAGAACTTGTTGGGCTTTTCAAAGCAAATAACATCGATGGCAAAGAACTCGTGAATCTTACAAGAGAAAGCCTGATTCATGAATTAAAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574-20-28,20-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(69.2=73.0)
A:
NA
C2:
PF0764712=SAM_2=PU(74.2=79.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCACGGGTTCAATGGATAA
R:
TCCTCTGACCAGTTCTCAGCA
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]