HsaALTA1052864-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000196151 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
Coordinates
chr2:159256196-159257864:-
Coord C1 exon
chr2:159257758-159257864
Coord A exon
chr2:159256372-159256375
Coord C2 exon
chr2:159256196-159256371
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
ACTTGTTTGTTTATTTTAAGCAA
3' ss Score
6.46
Exon sequences
Seq C1 exon
GTATGTCACAACTTGTGCTTTTGCACCTAATACCCTTTTACTTGCTACTGGTTCAATGGACAAAACAGTGAACATCTGGCAATTTGACCTGGAAACACTTTGCCAAG
Seq A exon
CAAG
Seq C2 exon
GCGCACAGAACATCAGCTGAAGCAATTTACCGAAGATTGGTCAGAGGAGGATGTCTCAACATGGCTTTGTGCACAAGATTTAAAAGATCTTGTTGGTATTTTCAAGATGAATAACATTGATGGAAAAGAACTGTTGAATCTTACAAAAGAAAGTCTGGCTGATGATTTGAAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196151-17-13,17-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(69.2=73.0)
A:
NA
C2:
PF0053625=SAM_1=PU(96.0=78.7),PF0456410=U-box=PU(5.5=4.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTGGAAACACTTTGCCA
R:
TGTGCACAAAGCCATGTTGAG
Band lengths:
98-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains