RnoALTA0044833-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005990 | Wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:RGD Symbol;Acc:1359296]
Coordinates
chr3:45934082-45935482:-
Coord C1 exon
chr3:45935376-45935482
Coord A exon
chr3:45934259-45934261
Coord C2 exon
chr3:45934082-45934258
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CTTGGCCTGCGGTTTTAAAGCAG
3' ss Score
4.65
Exon sequences
Seq C1 exon
GTACGTCACGACTTGTGCGTTTGCACCCAACACTCTCTTACTTGCTACTGGTTCGATGGACAAGACAGTGAACATTTGGCAGTTTGACCTGGAAACACCTTGCCAAG
Seq A exon
CAG
Seq C2 exon
GAAGCGTAAGCGATCAGCTGAAACATTTCATTGAGGACTGGTCAGAGGAGGATGTCTCAAAATGGCTTCGTGCTCAAGGCTTGGAAGACCTCGTTGATATTTTCCGGACAAACAACATCGACGGGAAAGAACTATTGCACCTCACAAAGGAAAGTCTGGCTGGTGATATGAAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005990-17-17,17-16,17-15,17-14-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(69.2=73.0)
A:
NA
C2:
PF0764712=SAM_2=PU(74.2=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGAAACACCTTGCCAA
R:
GCACGAAGCCATTTTGAGACA
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]